| 1 | European Molecular Biology Laboratory | | Germany | Standard | institution wide |
| 2 | Institut für Allgemeine Mikrobiologie | Mathematisch-Naturwissenschaftliche Fakultät | Germany | Standard | subscription keys |
| 3 | Forschungsintitut fuer molekulare Pathologie GmbH | | Austria | iTOL annotation editor (includes Standard) | subscription keys |
| 4 | Tokyo Medical and Dental University | Department of Molecular Microbiology | Japan | iTOL annotation editor (includes Standard) | subscription keys |
| 5 | Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool | Clinical Infection, Microbiology & Immunology | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 6 | Max Planck Institute for Developmental Biology | Department of Microbiome Science | Germany | Standard | subscription keys |
| 7 | Institute of Biochemistry and Biophysics | | Poland | iTOL annotation editor (includes Standard) | subscription keys |
| 8 | Research Center Borstel | Molekulare Mykobateriologie | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 9 | VISAVET (Veterinary Health Research Centre) | | Spain | iTOL annotation editor (includes Standard) | subscription keys |
| 10 | UC Davis | Zerbe | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 11 | Westerdijk Fungal Diversity Institute | Group Jérôme Collemare | Netherlands | Standard | subscription keys |
| 12 | QLD Department of Health, Forensic and Scientific Services | Public Health Microbiology | Australia | Standard | subscription keys |
| 13 | Universidad Nacional Autónoma de México | Centro de Ciencias Genómicas/Programa de Genómica Evolutiva | Mexico | iTOL annotation editor (includes Standard) | subscription keys |
| 14 | Statens Serum Institut | | Denmark | iTOL annotation editor (includes Standard) | subscription keys |
| 15 | Friedrich-Loeffler-Institut, Bundesforschungsinstitut für Tiergesundheit | Institut für bakterielle Infektionen und Zoonosen | Germany | Standard | subscription keys |
| 16 | Centers for Disease Control and Prevention | Office of Advanced Molecular Detection | United States of America | iTOL annotation editor (includes Standard) | institution wide |
| 17 | Virginia Tech | Aylward lab, Biological Sciences Department | United States of America | Standard | subscription keys |
| 18 | Ghent University | Laboratory of microbiology | Belgium | Standard | subscription keys |
| 19 | University of Liège | InBioS - PhytoSYSTEMS, Eukaryotic Phylogenomics | Belgium | iTOL annotation editor (includes Standard) | subscription keys |
| 20 | Vanderbilt University | Rokas Lab Group | United States of America | Standard | subscription keys |
| 21 | The Sanger Institute | Team 162 | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 22 | Heidelberg University Hospital | Department of Infectous Diseases, Molecular Virology | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 23 | University of Texas Austin | Brett Baker | United States of America | Standard | subscription keys |
| 24 | Christian Medical College | Clinical Microbiology | India | Standard | subscription keys |
| 25 | Skolkovo Institute of Science and Technology | Center of Life Sciences | Russian Federation | iTOL annotation editor (includes Standard) | subscription keys |
| 26 | University of Georgia | Biochemistry & Molecular Biology - Adams Lab | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 27 | Max-Delbrück-Center | AG Forslund | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 28 | University of Pittsburgh | Division of Infectious Diseases | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 29 | LifeMine Therapeutics | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 30 | City University of Hong Kong | Infectious Diseases and Public Health | Hong Kong | iTOL annotation editor (includes Standard) | subscription keys |
| 31 | Institut Pasteur | Hub of Bioinformatics and Biostatistics Christophe | France | Standard | institution wide |
| 32 | The University of British Columbia | Steven Hallam Lab | Canada | Standard | subscription keys |
| 33 | Institute of Hydrobiology | Department of Aquatic Microbial Ecology | Czechia | iTOL annotation editor (includes Standard) | subscription keys |
| 34 | Queen's University | Department of Biology | Canada | Standard | subscription keys |
| 35 | Stanford University | Welander Lab | United States of America | Standard | subscription keys |
| 36 | Utrecht University | Theoretical Biology & Bioinformatics | Netherlands | Standard | subscription keys |
| 37 | Max-Planck-Institut for marine microbiology | IT dept | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 38 | Sciensano | ICT department | Belgium | iTOL annotation editor (includes Standard) | subscription keys |
| 39 | TWINCORE, Centre for Experimental and Clinical Infection Research GmbH | Institute for Experimental Virology, Computational Virology research group | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 40 | CNRS | UMR Genomique Metabolique | France | iTOL annotation editor (includes Standard) | subscription keys |
| 41 | CNRS,TIMC-IMAG | TrEE | France | Standard | subscription keys |
| 42 | Fondation Mérieux | | France | iTOL annotation editor (includes Standard) | subscription keys |
| 43 | The University of British Columbia | Crowe Lab | Canada | iTOL annotation editor (includes Standard) | subscription keys |
| 44 | University of Technology, Sydney | Djordjevic Genomics group (i3) | Australia | Standard | subscription keys |
| 45 | University of Vienna | Centre for Microbiology and Environmental Systems Science, Division of Microbial Ecology | Austria | iTOL annotation editor (includes Standard) | subscription keys |
| 46 | Robert Koch-Institut | FG 13 | Germany | Standard | subscription keys |
| 47 | INRAE | IGEPP | France | Standard | subscription keys |
| 48 | CNRS, TIMC-IMAG | TrEE | France | Standard | subscription keys |
| 49 | Quadram Institute Bioscience | Adriaenssens Group | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 50 | Mammoth Biosciences | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 51 | Shandong First Medical University & Shandong Academy of Medical Sciences | Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong | China | iTOL annotation editor (includes Standard) | subscription keys |
| 52 | bioMérieux | Applied Maths | Belgium | Standard | subscription keys |
| 53 | Hainan University | School of Plant Protection | China | iTOL annotation editor (includes Standard) | subscription keys |
| 54 | Queen's University | Biology | Canada | iTOL annotation editor (includes Standard) | subscription keys |
| 55 | Yonsei University | Bioinformatics laboratory | Korea, The Republic of | iTOL annotation editor (includes Standard) | subscription keys |
| 56 | Institute of Science and Technology Austria | Group Kondrashov | Austria | Standard | subscription keys |
| 57 | Universität Duisburg-Essen | AG Phykologie | Germany | Standard | subscription keys |
| 58 | ZALF - Leibniz Centre for Agricultural Landscape Research | Microbial Biogeochemistry | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 59 | Friedrich-Loeffler-Institut, Bundesforschungsinstitut für Tiergesundheit | Institut für bakterielle Infektionen und Zoonosen | Germany | Standard | subscription keys |
| 60 | Universiti Sultan Zainal Abidin | Centre for Research in Infectious Diseases and Biotechnology | Malaysia | iTOL annotation editor (includes Standard) | subscription keys |
| 61 | Walter Reed Army Institue of Research | BDB / MRSN | United States of America | Standard | subscription keys |
| 62 | Bernhard Nocht Institute for Tropical Medicine | Arbovirology | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 63 | Japan Aerospace Exploration Agency | | Japan | iTOL annotation editor (includes Standard) | subscription keys |
| 64 | Istituto Zooprofilattico Sperimentale del Lazio e della Toscana M. Aleandri | Direzione Operativa Diagnostica Generale | Italy | iTOL annotation editor (includes Standard) | subscription keys |
| 65 | University of Regina | Cameron Lab/Biology | Canada | iTOL annotation editor (includes Standard) | subscription keys |
| 66 | Civetta Therapeutics | | United States of America | Standard | subscription keys |
| 67 | Karls Eberhard University of Tuebingen | Interfaculty Institute of Microbiology and Infection Medicine - Ziemert Lab | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 68 | Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool | Clinical Infection, Microbiology & Immunology | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 69 | The University of New South Wales | School of Biotechnology and Biomolecular Sciences | Australia | Standard | institution wide |
| 70 | Sciensano | ICT department | Belgium | iTOL annotation editor (includes Standard) | subscription keys |
| 71 | Ghent University | Plants and Crops, Lab. Phytopathology | Belgium | iTOL annotation editor (includes Standard) | subscription keys |
| 72 | QLD Department of Health, Forensic and Scientific Services | Public Health Microbiology | Australia | Standard | subscription keys |
| 73 | Queensland University of Technology | CIIC | Australia | iTOL annotation editor (includes Standard) | subscription keys |
| 74 | VISAVET (Veterinary Health Research Centre) | | Spain | iTOL annotation editor (includes Standard) | subscription keys |
| 75 | Princeton University | Chan Lab | United States of America | Standard | subscription keys |
| 76 | Max Planck Institute for Developmental Biology | Department of Microbiome Science | Germany | Standard | subscription keys |
| 77 | Virginia Tech | Aylward lab | United States of America | Standard | subscription keys |
| 78 | Kyoto University | Institute for Chemical Research | Japan | Standard | subscription keys |
| 79 | La Trobe University | Gendall Lab | Australia | iTOL annotation editor (includes Standard) | subscription keys |
| 80 | Christian Medical College, Vellore | Department of Clinical Microbiology | India | Standard | subscription keys |
| 81 | Tokyo Medical and Dental University | Department of Molecular Microbiology | Japan | iTOL annotation editor (includes Standard) | subscription keys |
| 82 | Dartmouth College | Zhaxybayeva Lab, Department of Biological Sciences | United States of America | Standard | subscription keys |
| 83 | Statens Serum Institut | | Denmark | Standard | subscription keys |
| 84 | Utrecht University | Theoretical Biology & Bioinformatics | Netherlands | Standard | subscription keys |
| 85 | LifeMine Therapeutics | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 86 | University of Texas Austin | Brett Baker | United States of America | Standard | subscription keys |
| 87 | Westerdijk Fungal Diversity Institute | Group Jérôme Collemare | Netherlands | Standard | subscription keys |
| 88 | Universidad Austral de Chile | FONDECYT 1210471 | Chile | iTOL annotation editor (includes Standard) | subscription keys |
| 89 | The Sanger Institute | Team 162 | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 90 | Joyn Bio | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 91 | Institute of Hydrobiology | Department of Aquatic Microbial Ecology | Czechia | iTOL annotation editor (includes Standard) | subscription keys |
| 92 | Max-Planck-Institut für marine MIkrobiologie | Symbiosis | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 93 | Max-Planck-Institut für marine MIkrobiologie | Biogeo | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 94 | University of Pittsburgh | Epidemiology | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 95 | Research Center Borstel | Molekulare Mykobateriologie | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 96 | CEA | LABGeM | France | iTOL annotation editor (includes Standard) | subscription keys |
| 97 | INRAE | UMR IGEPP | France | Standard | subscription keys |
| 98 | City University of Hong Kong | Research Group of Prof. Sheng Chen, Department of Infectious Diseases and Public Health | Hong Kong | iTOL annotation editor (includes Standard) | subscription keys |
| 99 | Max-Planck-Institut fü marine Mikrobiologie | Habitat | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 100 | Institut Pasteur | Hub of Bioinformatics and Biostatistics Christophe | France | Standard | institution wide |
| 101 | University of Technology, Sydney | Djordjevic Genomics group (i3) | Australia | Standard | subscription keys |
| 102 | Max-Delbrück Center for Molecular Medicine | AG Forslund | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 103 | Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences | KGC ICG | Russian Federation | iTOL annotation editor (includes Standard) | subscription keys |
| 104 | Massey University | | New Zealand | Standard | subscription keys |
| 105 | Laboratoriemedicin | University hospital | Sweden | iTOL annotation editor (includes Standard) | subscription keys |
| 106 | Stanford University | Robinson Lab | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 107 | University of Vienna | Centre for Microbiology and Environmental Systems Science, Division of Microbial Ecology | Austria | iTOL annotation editor (includes Standard) | subscription keys |
| 108 | Centers for Disease Control and Prevention | Office of Advanced Molecular Detection | United States of America | iTOL annotation editor (includes Standard) | institution wide |
| 109 | New York University Grossman School of Medicine | Microbiology | United States of America | Standard | subscription keys |
| 110 | ICAR National Research Centre for Banana | Crop Improvement Division | India | Standard | subscription keys |
| 111 | University of British Columbia | Hallam Lab | Canada | Standard | subscription keys |
| 112 | Robert Koch-Institut | | Germany | Standard | subscription keys |
| 113 | ANSES Ploufragan | GVB unit | France | iTOL annotation editor (includes Standard) | subscription keys |
| 114 | UKHSA | | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 115 | Stanford University | Welander Lab | United States of America | Standard | subscription keys |
| 116 | University of Exeter | Biosciences | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 117 | Robert Koch-Institut | | Germany | Standard | subscription keys |
| 118 | Vanderbilt University | Rokas Lab | United States of America | Standard | subscription keys |
| 119 | Swedish University of Agricultural Sciences | Soil Microbiology | Sweden | iTOL annotation editor (includes Standard) | subscription keys |
| 120 | Tegara Corporation | | Japan | iTOL annotation editor (includes Standard) | subscription keys |
| 121 | Indian Institute of Science Education and Research | Dr. Amrita Hazra Lab | India | iTOL annotation editor (includes Standard) | subscription keys |
| 122 | Szkoła Główna Gospodarstwa Wiejskiego w Warszawie | | Poland | iTOL annotation editor (includes Standard) | subscription keys |
| 123 | University of Liverpool | Clinical Infection, Microbiology & Immunology | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 124 | Max Planck Institute for Evolutionary Biology | Computing Center | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 125 | iNRAE | IGEPP | France | Standard | subscription keys |
| 126 | Universiti Sultan Zainal Abidin | Centre for Research in Infectious Diseases and Biotechnology (CeRIDB) | Malaysia | iTOL annotation editor (includes Standard) | subscription keys |
| 127 | Atmosphere and Ocean Research Institute, The University of Tokyo | Marine Biogeochemistry Group | Japan | iTOL annotation editor (includes Standard) | subscription keys |
| 128 | MRC-University of Glasgow Centre for Virus Research | | United Kingdom of Great Britain and Northern Ireland | Standard | subscription keys |
| 129 | University of Cambridge | MRC Toxicology Unit | United Kingdom of Great Britain and Northern Ireland | Standard | subscription keys |
| 130 | Max-Planck-Institut für marine Mikrobiologie | molecol | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 131 | University of British Columbia | Botany | Canada | iTOL annotation editor (includes Standard) | subscription keys |
| 132 | Friedrich-Loeffler-Institut, Bundesforschungsinstitut für Tiergesundheit | Institut für bakterielle Infektionen und Zoonosen | Germany | Standard | subscription keys |
| 133 | University of Tennessee | Department of Animal Science | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 134 | Quadram Institute Bioscience | | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 135 | Instituto Nacional Investigacão Agrária e Veterinária (INIAV) | | Portugal | iTOL annotation editor (includes Standard) | subscription keys |