| 1 | European Molecular Biology Laboratory | | Germany | Standard | institution wide |
| 2 | Max Planck Institute for Developmental Biology | Department of Microbiome Science | Germany | Standard | subscription keys |
| 3 | Research Center Borstel | Molekulare Mykobateriologie | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 4 | UC Davis | Zerbe | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 5 | Centers for Disease Control and Prevention | Office of Advanced Molecular Detection | United States of America | iTOL annotation editor (includes Standard) | institution wide |
| 6 | Virginia Tech | Aylward lab, Biological Sciences Department | United States of America | Standard | subscription keys |
| 7 | The Sanger Institute | Team 162 | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 8 | University of Texas Austin | Brett Baker | United States of America | Standard | subscription keys |
| 9 | LifeMine Therapeutics | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 10 | Institut Pasteur | Hub of Bioinformatics and Biostatistics Christophe | France | Standard | institution wide |
| 11 | The University of British Columbia | Steven Hallam Lab | Canada | Standard | subscription keys |
| 12 | Stanford University | Welander Lab | United States of America | Standard | subscription keys |
| 13 | Utrecht University | Theoretical Biology & Bioinformatics | Netherlands | Standard | subscription keys |
| 14 | Max-Planck-Institut for marine microbiology | IT dept | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 15 | TWINCORE, Centre for Experimental and Clinical Infection Research GmbH | Institute for Experimental Virology, Computational Virology research group | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 16 | Fondation Mérieux | | France | iTOL annotation editor (includes Standard) | subscription keys |
| 17 | University of Vienna | Centre for Microbiology and Environmental Systems Science, Division of Microbial Ecology | Austria | iTOL annotation editor (includes Standard) | subscription keys |
| 18 | INRAE | IGEPP | France | Standard | subscription keys |
| 19 | Mammoth Biosciences | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 20 | Shandong First Medical University & Shandong Academy of Medical Sciences | Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong | China | iTOL annotation editor (includes Standard) | subscription keys |
| 21 | Hainan University | School of Plant Protection | China | iTOL annotation editor (includes Standard) | subscription keys |
| 22 | Universität Duisburg-Essen | AG Phykologie | Germany | Standard | subscription keys |
| 23 | ZALF - Leibniz Centre for Agricultural Landscape Research | Microbial Biogeochemistry | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 24 | Walter Reed Army Institue of Research | BDB / MRSN | United States of America | Standard | subscription keys |
| 25 | Japan Aerospace Exploration Agency | | Japan | iTOL annotation editor (includes Standard) | subscription keys |
| 26 | Civetta Therapeutics | | United States of America | Standard | subscription keys |
| 27 | The University of New South Wales | School of Biotechnology and Biomolecular Sciences | Australia | Standard | institution wide |
| 28 | Queensland University of Technology | CIIC | Australia | iTOL annotation editor (includes Standard) | subscription keys |
| 29 | Kyoto University | Institute for Chemical Research | Japan | Standard | subscription keys |
| 30 | LifeMine Therapeutics | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 31 | University of Texas Austin | Brett Baker | United States of America | Standard | subscription keys |
| 32 | Joyn Bio | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 33 | Max-Planck-Institut für marine MIkrobiologie | Symbiosis | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 34 | University of Pittsburgh | Epidemiology | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 35 | Research Center Borstel | Molekulare Mykobateriologie | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 36 | Institut Pasteur | Hub of Bioinformatics and Biostatistics Christophe | France | Standard | institution wide |
| 37 | Max-Delbrück Center for Molecular Medicine | AG Forslund | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 38 | Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences | KGC ICG | Russian Federation | iTOL annotation editor (includes Standard) | subscription keys |
| 39 | Stanford University | Robinson Lab | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 40 | Centers for Disease Control and Prevention | Office of Advanced Molecular Detection | United States of America | iTOL annotation editor (includes Standard) | institution wide |
| 41 | University of British Columbia | Hallam Lab | Canada | Standard | subscription keys |
| 42 | Robert Koch-Institut | | Germany | Standard | subscription keys |
| 43 | UKHSA | | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 44 | Robert Koch-Institut | | Germany | Standard | subscription keys |
| 45 | Vanderbilt University | Rokas Lab | United States of America | Standard | subscription keys |
| 46 | Szkoła Główna Gospodarstwa Wiejskiego w Warszawie | | Poland | iTOL annotation editor (includes Standard) | subscription keys |
| 47 | University of Liverpool | Clinical Infection, Microbiology & Immunology | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 48 | INRAE | UMR 1163 BBF (Biodiversité et Biotechnologie Fongiques) | France | iTOL annotation editor (includes Standard) | subscription keys |
| 49 | Max Planck Institute for Evolutionary Biology | Computing Center | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 50 | iNRAE | IGEPP | France | Standard | subscription keys |
| 51 | Atmosphere and Ocean Research Institute, The University of Tokyo | Marine Biogeochemistry Group | Japan | iTOL annotation editor (includes Standard) | subscription keys |
| 52 | MRC-University of Glasgow Centre for Virus Research | | United Kingdom of Great Britain and Northern Ireland | Standard | subscription keys |
| 53 | University of Oxford | Centre for Medicines Discovery | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 54 | University of Cambridge | MRC Toxicology Unit | United Kingdom of Great Britain and Northern Ireland | Standard | subscription keys |
| 55 | University of Tennessee | Department of Animal Science | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 56 | Quadram Institute Bioscience | | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 57 | Sciensano | ICT department | Belgium | iTOL annotation editor (includes Standard) | subscription keys |
| 58 | Aberystwyth University | CBTB | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 59 | The University of New South Wales | School of Biotechnology and Biomolecular Sciences | Australia | Standard | institution wide |
| 60 | LifeMine Therapeutics | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 61 | University of Texas at Austin | Marine Science Institute | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 62 | North-West University - Potchefstroom Campus | Microbiology | South Africa | iTOL annotation editor (includes Standard) | subscription keys |
| 63 | UC Berkeley | Krasileva Lab/Plant and Microbial Biology | United States of America | Standard | subscription keys |
| 64 | Max-Planck-Institute for Marine Microbiology | symbioses | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 65 | University of Manchester | Manchester Institute of Biotechnology | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 66 | Oliver Artmann | habitat | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 67 | Friedrich-Loeffler-Institut, Bundesforschungsinstitut für Tiergesundheit | Institut für bakterielle Infektionen und Zoonosen | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 68 | Max-Planck-Institut für marine Mikrobiologie | eei | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 69 | Wellcome Sanger Institute | | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 70 | National Institute of Infectious Diseases | | Japan | iTOL annotation editor (includes Standard) | subscription keys |
| 71 | INRAE | UMR IGEPP 1349 | France | Standard | subscription keys |
| 72 | Swedish University of Agricultural Sciences | Soil Microbiology | Sweden | iTOL annotation editor (includes Standard) | subscription keys |
| 73 | The Hong Kong Polytechnic University | Department of FSN | Hong Kong | iTOL annotation editor (includes Standard) | subscription keys |
| 74 | University of Minnesota | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 75 | ACMM | | France | iTOL annotation editor (includes Standard) | subscription keys |
| 76 | Vanderbilt University | Rokas Lab, Biological Sciences Department | United States of America | Standard | subscription keys |
| 77 | Wageningen University & Research | Bioinformatic Group (EPS) | Netherlands | iTOL annotation editor (includes Standard) | subscription keys |
| 78 | University of Glasgow | MRC Centre for Virus Research | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 79 | UKHSA | VRD | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 80 | Research Institut of Molecular Pathology, IMP | | Austria | Standard | subscription keys |
| 81 | North Carolina State University | Wiegmann, Entomology and Plant Pathology | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 82 | UNIVERSIDAD NACIONAL AUTONOMA DE MEXICO | CCG - Programa Genmica Evolutiva | Mexico | iTOL annotation editor (includes Standard) | subscription keys |
| 83 | Sciensano | ICT department | Belgium | iTOL annotation editor (includes Standard) | subscription keys |
| 84 | Facultad de Ciencias, UNAM | Biología Evolutiva | Mexico | iTOL annotation editor (includes Standard) | subscription keys |
| 85 | Forschungszentrum Borstel | Molecular and experimental mycobacteriology | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 86 | Forschungszentrum Borstel | Evolution des Resistoms Dr. M. Merker | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 87 | LifeMine Therapeutics | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 88 | Wellcome Sanger Institute | | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 89 | Institut Pasteur | Hub of Bioinformatics and Biostatistics Christophe | France | Standard | institution wide |
| 90 | Biology Centre CAS, Institute of Hydrobiology | Dept. of Aquatic Microbial Ecology | Czechia | Standard | subscription keys |
| 91 | Centers for Disease Control and Prevention | Office of Advanced Molecular Detection | United States of America | iTOL annotation editor (includes Standard) | institution wide |
| 92 | Technical University of Denmark, National Food Institute | Genomic Epidemiology | Denmark | iTOL annotation editor (includes Standard) | subscription keys |
| 93 | Aga Khan University | Paediatrics and Child Health | Pakistan | iTOL annotation editor (includes Standard) | subscription keys |
| 94 | CEA | Institut de biologie François Jacob | France | iTOL annotation editor (includes Standard) | subscription keys |
| 95 | Umeå University | Department of Clinical Microbiology | Sweden | Standard | subscription keys |
| 96 | Ville de Genève | CJBG | Switzerland | iTOL annotation editor (includes Standard) | subscription keys |
| 97 | University of Technology Sydney | Djordjevic Lab | Australia | Standard | subscription keys |
| 98 | National Agri-Food Biotechnology Institute | Agri-Biotechnology | India | Standard | subscription keys |
| 99 | INRAE | UMR IGEPP 1349 | France | Standard | subscription keys |
| 100 | INRAE | BBF UMR1163 | France | iTOL annotation editor (includes Standard) | subscription keys |
| 101 | Virginia Department of Health | Office of Epidemiology | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 102 | Insitute of Hygiene and Infectious Diseases of Animals, Justus Liebig University Giessen | Prof. Dr. Christa Ewers | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 103 | HHMI/UC Berkeley | King Lab | United States of America | Standard | subscription keys |
| 104 | Florida Atlantic University- Wilkes Honors College | Mincer Lab | United States of America | Standard | subscription keys |
| 105 | CNRS - SCTD | TSA 51003 | France | Standard | subscription keys |
| 106 | CNRS - SCTD | TSA 51003 | France | Standard | subscription keys |
| 107 | Vanderbilt University | Rokas Lab Biological Sciences | United States of America | Standard | subscription keys |
| 108 | Statens Serum Institut | | Denmark | iTOL annotation editor (includes Standard) | subscription keys |
| 109 | UCRC USTTB | | Mali | iTOL annotation editor (includes Standard) | subscription keys |
| 110 | Public Health Agency of Canada | | Canada | iTOL annotation editor (includes Standard) | subscription keys |
| 111 | UKHSA | VRD | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 112 | University of North Carolina at Charlotte | NCRC - Department of Bioinformatics and Genomics | United States of America | Standard | subscription keys |
| 113 | Gregor Mendel Institut fr Molekulare Pflanzenbiologie GmbH | | Austria | Standard | subscription keys |
| 114 | Embrapa - Empresa Brasileira de Pesquisa Agropecuria | Embrapa Genetic Resources and Biotechnology | Brazil | iTOL annotation editor (includes Standard) | subscription keys |
| 115 | COFAC - Cooperativa de Formação e Animação Cultural, C.R.L. | Faculdade de Medicina Veterinária (Projecto ResisCampyOH) | Portugal | iTOL annotation editor (includes Standard) | subscription keys |
| 116 | Swedish University of Agricultural Sciences | (390ASI) | Sweden | iTOL annotation editor (includes Standard) | subscription keys |
| 117 | Sciensano | ICT department | Belgium | iTOL annotation editor (includes Standard) | subscription keys |
| 118 | Universidad Nacional | Escuela de Ciencias Biológicas | Costa Rica | Standard | subscription keys |
| 119 | Inst. for Pharmaceutical Sciences | | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 120 | Arena BioWorks | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 121 | Stanford University | Earth System Science | United States of America | Standard | subscription keys |
| 122 | University of Ljubljana, Biotechnical faculty | Department of Microbiology, Chair of microbial ecology and physiology | Slovenia | iTOL annotation editor (includes Standard) | subscription keys |
| 123 | Ministry of Health | Public Health Laboratories | Israel | iTOL annotation editor (includes Standard) | subscription keys |
| 124 | Kyoto University | Institute for Chemical Research | Japan | Standard | subscription keys |
| 125 | Max-Planck-Institut f. marine Mikrobiologie | symbiosis | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 126 | LifeMine Therapeutics | | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 127 | Max-Planck-Institut f. marine Mikrobiologie | Biogeo | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 128 | University of Basel | Biozentrum | Switzerland | iTOL annotation editor (includes Standard) | subscription keys |
| 129 | Commissariat à l'énergie atomique et aux énergies alternatives (CEA) | DRF | France | iTOL annotation editor (includes Standard) | subscription keys |
| 130 | Umeå University | Dept. of Chemistry | Sweden | iTOL annotation editor (includes Standard) | subscription keys |
| 131 | Max-Planck-Institut f. marine Mikrobiologie | protivir | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 132 | Centro de Vigilancia Sanitaria Veterinaria-Universidad Complutense de Madrid | | Spain | iTOL annotation editor (includes Standard) | subscription keys |
| 133 | Sanger Institute | Team162 - 11/03/2025 | United Kingdom of Great Britain and Northern Ireland | iTOL annotation editor (includes Standard) | subscription keys |
| 134 | UNIVERSIDAD NACIONAL AUTONOMA DE MEXICO | CCG - Programa Genmica Evolutiva | Mexico | iTOL annotation editor (includes Standard) | subscription keys |
| 135 | Instituto Salud Carlos III | Software Cientifico | Spain | iTOL annotation editor (includes Standard) | subscription keys |
| 136 | Universtitaet des Saarlandes | ZHMB - Plant Biology | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 137 | Einkauf - GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel | | Germany | iTOL annotation editor (includes Standard) | subscription keys |
| 138 | The Hong Kong Polytechnic University | | Hong Kong | iTOL annotation editor (includes Standard) | subscription keys |
| 139 | Westerdijk Fungal Diversity Institute | Group Jrme Collemare | Netherlands | Standard | subscription keys |
| 140 | University of Vienna | Finance and Controlling, 891202 | Austria | iTOL annotation editor (includes Standard) | subscription keys |
| 141 | Vanderbilt University | Biological Sciences | United States of America | Standard | subscription keys |
| 142 | RIKEN | Geobiology and Astrobiology Laboratory, Pioneering Research Institute | Japan | Standard | subscription keys |
| 143 | Centre d'Infectiologie Charles Mérieux, Antananarivo University, Madagascar | | Madagascar | iTOL annotation editor (includes Standard) | subscription keys |
| 144 | USDA ARS WRRC PSM | Produce Safety and Microbiology Unit | United States of America | iTOL annotation editor (includes Standard) | subscription keys |
| 145 | Oxford University Clinical Research Unit | Molecular Epidemiology | Viet Nam | iTOL annotation editor (includes Standard) | subscription keys |
| 146 | Ministry of Public Health, Thailand | Department of Medical Sciences | Thailand | Standard | subscription keys |
| 147 | Ginkgo Bioworks | Biosecurity | United States of America | iTOL annotation editor (includes Standard) | subscription keys |