DATASET_SIMPLEBAR #In simple bar charts, each ID is associated to a single numeric value which is displayed as a bar outside the tree. #lines starting with a hash are comments and ignored during parsing #=================================================================# # MANDATORY SETTINGS # #=================================================================# #select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throughout this file. #SEPARATOR TAB #SEPARATOR SPACE SEPARATOR COMMA #label is used in the legend table (can be changed later) DATASET_LABEL,label 1 #dataset color (can be changed later) COLOR,#ff0000 #=================================================================# # OPTIONAL SETTINGS # #=================================================================# #=================================================================# # all other optional settings can be set or changed later # # in the web interface (under 'Datasets' tab) # #=================================================================# #dataset scale: you can simply set the values where the scale will be drawn #DATASET_SCALE,2000,10000,20000 #or you can specify value, label, color, width, style and label size factor for each scale line (dash separated, format: VALUE-LABEL-COLOR-WIDTH-DASHED-LABEL_SCALE_FACTOR)) #DATASET_SCALE,2000-2k line-#0000ff-5-1-1,10000-line at 10k-#ff0000-1-0-2,20000-3rd line-#00ff00-5-1-1 #Each dataset can have a legend, which is defined using LEGEND_XXX fields below #For each row in the legend, there should be one shape, color and label. #Optionally, you can define an exact legend position using LEGEND_POSITION_X and LEGEND_POSITION_Y. To use automatic legend positioning, do NOT define these values #Optionally, shape scaling can be present (LEGEND_SHAPE_SCALES). For each shape, you can define a scaling factor between 0 and 1. #To order legend entries horizontally instead of vertically, set LEGEND_HORIZONTAL to 1 #Shape should be a number between 1 and 6, or any protein domain shape definition. #1: square #2: circle #3: star #4: right pointing triangle #5: left pointing triangle #6: checkmark #LEGEND_TITLE,Dataset legend #LEGEND_SCALE,1 #LEGEND_POSITION_X,100 #LEGEND_POSITION_Y,100 #LEGEND_HORIZONTAL,0 #LEGEND_SHAPES,1,2,3 #LEGEND_COLORS,#ff0000,#00ff00,#0000ff #LEGEND_LABELS,value1,value2,value3 #LEGEND_SHAPE_SCALES,1,1,0.5 #maximum width #WIDTH,1000 #left margin, used to increase/decrease the spacing to the next dataset. Can be negative, causing datasets to overlap. #MARGIN,0 #always show internal values; if set, values associated to internal nodes will be displayed even if these nodes are not collapsed. It could cause overlapping in the dataset display. #SHOW_INTERNAL,0 #show dashed lines between leaf labels and the dataset #DASHED_LINES,1 #bar height factor; Default bar height will be slightly less than the available space between leaves, but you can set a multiplication factor here to increase/decrease it (values from 0 to 1 will decrease it, values above 1 will increase it) #HEIGHT_FACTOR,1 #Display individual values above the bars #SHOW_VALUE,0 #Display custom bar labels, when defined. The label can be specified after the numeric value in the DATA section below. #SHOW_LABELS,0 #Position of the value or custom label, relative to the bar (when SHOW_VALUE or SHOW_LABELS are set to 1) #can be one of: outside-right, outside-left, left, center, right #LABEL_POSITION,outside-right #shift all labels horizontally and/or vertically #LABEL_SHIFT_X,0 #LABEL_SHIFT_Y,0 #add a colored outline to the label font; useful when displaying labels over similarly colored boxes (e.g. black font on a dark box) #LABEL_OUTLINE_WIDTH,0 #LABEL_OUTLINE_COLOR,#ffffff #multiply the size of all labels by this factor #LABEL_SIZE_FACTOR,1 #Bars are aligned to the node lines by default. Using BAR_SHIFT, you can move them all up/down by a fixed amount #BAR_SHIFT,0 #BAR_ZERO specifies which dataset value will be used as a starting point for drawing the bars. Dataset values smaller than BAR_ZERO will be displayed to the left (possibly overlapping the tree, unless MARGIN is increased) #BAR_ZERO,0 #border width; if set above 0, a border of specified width (in pixels) will be drawn around the bars #BORDER_WIDTH,0 #border color; used when BORDER_WIDTH is above 0 #BORDER_COLOR,#0000ff #Internal tree nodes can be specified using IDs directly, or using the 'last common ancestor' method described in iTOL help pages #=================================================================# # Actual data follows after the "DATA" keyword # #=================================================================# #only numeric values are required for each ID, custom labels can be optionally provided as the second field (shown when SHOW_LABELS is set to 1) DATA #ID1,value1,label1 #ID2,value2,label2 #9606,10000,Homo sapiens value #LEAF1|LEAF2,11000