DATASET_GRADIENT #In gradient datasets, each ID is associated to a single numeric value which is converted to a colored box based on the gradient defined. #lines starting with a hash are comments and ignored during parsing #=================================================================# # MANDATORY SETTINGS # #=================================================================# #select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throught this file. #SEPARATOR TAB SEPARATOR SPACE #SEPARATOR COMMA #label is used in the legend table (can be changed later) DATASET_LABEL label 1 #dataset color (can be changed later) COLOR #ff0000 #=================================================================# # OPTIONAL SETTINGS # #=================================================================# #=================================================================# # all other optional settings can be set or changed later # # in the web interface (under 'Datasets' tab) # #=================================================================# #Each dataset can have a legend, which is defined using LEGEND_XXX fields below #For each row in the legend, there should be one shape, color and label. #Optionally, you can define an exact legend position using LEGEND_POSITION_X and LEGEND_POSITION_Y. To use automatic legend positioning, do NOT define these values #Optionally, shape scaling can be present (LEGEND_SHAPE_SCALES). For each shape, you can define a scaling factor between 0 and 1. #To order legend entries horizontally instead of vertically, set LEGEND_HORIZONTAL to 1 #Shape should be a number between 1 and 6, or any protein domain shape definition. #1: square #2: circle #3: star #4: right pointing triangle #5: left pointing triangle #6: checkmark #LEGEND_TITLE Dataset legend #LEGEND_SCALE 1 #LEGEND_POSITION_X 100 #LEGEND_POSITION_Y 100 #LEGEND_HORIZONTAL 0 #LEGEND_SHAPES 1 2 3 #LEGEND_COLORS #ff0000 #00ff00 #0000ff #LEGEND_LABELS value1 value2 value3 #LEGEND_SHAPE_SCALES 1 1 0.5 #width of the gradient strip #STRIP_WIDTH 25 #left margin, used to increase/decrease the spacing to the next dataset. Can be negative, causing datasets to overlap. #MARGIN 0 #border width; if set above 0, a border of specified width (in pixels) will be drawn around the gradient strip #BORDER_WIDTH 0 #border color; used when BORDER_WIDTH is above 0 #BORDER_COLOR #0000ff #automatically create and display a legend based on the color gradient defined below #AUTO_LEGEND 1 #define the gradient colors. Values in the dataset will be mapped onto the corresponding color gradient. #COLOR_MIN #ff0000 #COLOR_MAX #0000ff #you can specify a gradient with three colors (e.g red to yellow to green) by setting 'USE_MID_COLOR' to 1, and specifying the midpoint color #USE_MID_COLOR 1 #COLOR_MID #ffff00 #always show internal values; if set, values associated to internal nodes will be displayed even if these nodes are not collapsed. It could cause overlapping in the dataset display. #SHOW_INTERNAL 1 #display or hide the dataset label above the gradient strip #SHOW_LABELS 1 #text label size factor #SIZE_FACTOR 1 #text label rotation #LABEL_ROTATION 0 #text label shift in pixels (positive or negative) #LABEL_SHIFT 0 #Internal tree nodes can be specified using IDs directly, or using the 'last common ancestor' method described in iTOL help pages #=================================================================# # Actual data follows after the "DATA" keyword # #=================================================================# DATA #ID1 value1 #ID2 value2 #9606 10000 #LEAF1|LEAF2 11000