DATASET_BOXPLOT #Box plots (box and whisker diagrams) display the distribution of data based on the five number summary: minimum, first quartile, median, third quartile, and maximum. #In addition to a box plot, each node can have an unlimited number of extremes defined #lines starting with a hash are comments and ignored during parsing #=================================================================# # MANDATORY SETTINGS # #=================================================================# #select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throughout this file. #SEPARATOR TAB #SEPARATOR SPACE SEPARATOR COMMA #label is used in the legend table (can be changed later) DATASET_LABEL,example box plot #dataset color (can be changed later) COLOR,#ff0000 #=================================================================# # OPTIONAL SETTINGS # #=================================================================# #=================================================================# # all other optional settings can be set or changed later # # in the web interface (under 'Datasets' tab) # #=================================================================# #dataset scale: you can simply set the values where the scale will be drawn #DATASET_SCALE,2000,10000,20000 #or you can specify value, label, color, width, style and label size factor for each scale line (dash separated, format: VALUE-LABEL-COLOR-WIDTH-DASHED-LABEL_SCALE_FACTOR)) #DATASET_SCALE,2000-2k line-#0000ff-5-1-1,10000-line at 10k-#ff0000-1-0-2,20000-3rd line-#00ff00-5-1-1 #Each dataset can have a legend, which is defined using LEGEND_XXX fields below #For each row in the legend, there should be one shape, color and label. #Optionally, you can define an exact legend position using LEGEND_POSITION_X and LEGEND_POSITION_Y. To use automatic legend positioning, do NOT define these values #Optionally, shape scaling can be present (LEGEND_SHAPE_SCALES). For each shape, you can define a scaling factor between 0 and 1. #To order legend entries horizontally instead of vertically, set LEGEND_HORIZONTAL to 1 #Shape should be a number between 1 and 6, or any protein domain shape definition. #1: square #2: circle #3: star #4: right pointing triangle #5: left pointing triangle #6: checkmark #LEGEND_TITLE,Dataset legend #LEGEND_SCALE,1 #LEGEND_POSITION_X,100 #LEGEND_POSITION_Y,100 #LEGEND_HORIZONTAL,0 #LEGEND_SHAPES,1,2,3 #LEGEND_COLORS,#ff0000,#00ff00,#0000ff #LEGEND_LABELS,value1,value2,value3 #LEGEND_SHAPE_SCALES,1,1,0.5 #maximum width #WIDTH,1000 #left margin, used to increase/decrease the spacing to the next dataset. Can be negative, causing datasets to overlap. #MARGIN,0 #always show internal values; if set, values associated to internal nodes will be displayed even if these nodes are not collapsed. It could cause overlapping in the dataset display. #SHOW_INTERNAL,0 #show dashed lines between leaf labels and the dataset #DASHED_LINES,1 #bar height factor; Default bar height will be slightly less than the available space between leaves, but you can set a multiplication factor here to increase/decrease it (values from 0 to 1 will decrease it, values above 1 will increase it) #HEIGHT_FACTOR,1 #Bars are aligned to the node lines by default. Using BAR_SHIFT, you can move them all up/down by a fixed amount #BAR_SHIFT,0 #Internal tree nodes can be specified using IDs directly, or using the 'last common ancestor' method described in iTOL help pages #=================================================================# # Actual data follows after the "DATA" keyword # #=================================================================# DATA #each node must have the five number summary defined, followed by any number of extremes (if present) #ID1,minimum,q1,median,q3,maximum,extreme_value1,extreme_value2 #9606,100,150,220,280,350,10,15,20,500,540,600