DATASET_ARROWS
#Arrow datasets are visualized as sets of arrows outside the tree, with an optional backbone line/rectangle behind them

#lines starting with a hash are comments and ignored during parsing

#=================================================================#
#                    MANDATORY SETTINGS                           #
#=================================================================#
#select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throughout this file.
#SEPARATOR TAB
#SEPARATOR SPACE
SEPARATOR COMMA

#label is used in the legend table (can be changed later)
DATASET_LABEL,label1

#dataset color (can be changed later)
COLOR,#ff0000

#=================================================================#
#                    OPTIONAL SETTINGS                            #
#=================================================================#

#=================================================================#
#     all other optional settings can be set or changed later     #
#           in the web interface (under 'Datasets' tab)           #
#=================================================================#

#dataset scale: you can simply set the values where the scale will be drawn
#DATASET_SCALE,100,200,1000
#or you can specify value, label, color, width, style and label size factor for each scale line (dash separated, format: VALUE-LABEL-COLOR-WIDTH-DASHED-LABEL_SCALE_FACTOR))
#DATASET_SCALE,100-amino acid 100-#0000ff-5-1-1,200-line at aa200-#ff0000-1-0-2,1000-3rd aa line-#00ff00-5-1-1

#Each dataset can have a legend, which is defined using LEGEND_XXX fields below
#For each row in the legend, there should be one shape, color and label.
#Optionally, you can define an exact legend position using LEGEND_POSITION_X and LEGEND_POSITION_Y. To use automatic legend positioning, do NOT define these values
#Optionally, shape scaling can be present (LEGEND_SHAPE_SCALES). For each shape, you can define a scaling factor between 0 and 1.
#To order legend entries horizontally instead of vertically, set LEGEND_HORIZONTAL to 1
#Shape should be a number between 1 and 12, or any protein domain shape definition (RE, HH, HV...).
#1: square
#2: circle
#3: star
#4: right pointing triangle
#5: left pointing triangle
#6: checkmark
#7: solid line
#8: dashed line
#9: dotted line
#10:arrow left
#11:arrow right
#12:bidirectional arrow

#LEGEND_TITLE,Dataset legend
#LEGEND_SCALE,1
#LEGEND_POSITION_X,100
#LEGEND_POSITION_Y,100
#LEGEND_HORIZONTAL,0
#LEGEND_SHAPES,1,2,3
#LEGEND_COLORS,#ff0000,#00ff00,#0000ff
#LEGEND_LABELS,value1,value2,value3
#LEGEND_SHAPE_SCALES,1,1,0.5

#maximum width
#WIDTH,1000

#always show internal values; if set, values associated to internal nodes will be displayed even if these nodes are not collapsed. It could cause overlapping in the dataset display.
#SHOW_INTERNAL,0

#show dashed lines between leaf labels and the dataset
#DASHED_LINES,1

#left margin, used to increase/decrease the spacing to the next dataset. Can be negative, causing datasets to overlap.
#MARGIN,0

#arrow height factor; Default height of each arrow will be slightly less than the available space between leaves, but you can set a multiplication factor here to increase/decrease it (values from 0 to 1 will decrease it, values above 1 will increase it)
#HEIGHT_FACTOR,1

#arrows are aligned to the node lines by default. Using BAR_SHIFT, you can move them all up/down by a fixed amount
#BAR_SHIFT,0

#display or hide the text labels for each arrow
#SHOW_ARROW_LABELS,1

#set the size factor for the text labels
#LABEL_SIZE_FACTOR,1

#with LABELS_ON_TOP set to 0, label text which does not fit into the arrow will be hidden
#LABELS_ON_TOP,0

#rotate all domain labels by a custom angle
#LABEL_ROTATION,0

#if set to 1, calculate the domain label color automatically, based on the darkness of the domain. Labels will be white or black.
#LABEL_AUTO_COLOR,1

#Position of the label, relative to the arrow (start and end are relative to the arrow direction)
#can be one of: start, end or center
#LABEL_POSITION,center

#shift all labels horizontally and/or vertically
#LABEL_SHIFT_X,0
#LABEL_SHIFT_Y,0

#color of the background rectangle backbone displayed behind the arrows
#BACKBONE_COLOR,#aaaaaa

#height of the background rectangle (in pixels)
#BACKBONE_HEIGHT,10

#border width; if set above 0, a border of specified width (in pixels) will be drawn around the arrow shapes
#BORDER_WIDTH,0

#border color; used when BORDER_WIDTH is above 0
#BORDER_COLOR,#0000ff

#=================================================================#
#       Actual data follows after the "DATA" keyword              #
#=================================================================#
#Internal tree nodes can be specified using IDs directly, or using the 'last common ancestor' method described in iTOL help pages

DATA

#Each node can have one set of arrow definitions assigned, with the backbone size/width defined in field 2, followed by an unlimited number of arrow definitions

#Each arrow definition consists of 10 mandatory parts, separated with vertical lines:
#START|END|START_COLOR|END_COLOR|LABEL|LABEL_COLOR|ARROW_HEIGHT_FACTOR|BOX_HEIGHT_FACTOR|HEAD_WIDTH_LEFT|HEAD_WIDHT_RIGHT|...followed by any 'mark' defintions

#The mandatory 10 arrow definition parts can be followed by any number of "mark" definitions, which are rendered as vertical bars within the arrow.
#Each mark definition consists of 3 parts:
#START|END|COLOR

#an example for leaf node 9606: a 500 wide backbone will be overlaid with 2 arrows (shown on the help page)
#9606,500,10|110|#0000ff|#ff0000|arrow1|#ffffff|0.75|0.5|0|10|30|35|#ffff00,120|220|#00ff00|#00ff00|arrow2|#000000|1|1|-20|20|180|190|#ffffff|185|186|#000000