TREE_COLORS #use this template to define branch colors and styles, colored ranges and label colors/font styles/backgrounds #lines starting with a hash are comments and ignored during parsing #=================================================================# # MANDATORY SETTINGS # #=================================================================# #select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throughout this file. #SEPARATOR TAB SEPARATOR SPACE #SEPARATOR COMMA #First 3 fields define the node, type and color #Possible types are: #'range': defines a colored range (colored background for labels/clade) #'clade': defines color/style for all branches in a clade #'branch': defines color/style for a single branch #'label': defines font color/style for the leaf label #'label_background': defines the leaf label background color #The following additional fields are required: #for 'range', field 4 defines the colored range label (used in the legend) #The following additional fields are optional: #for 'label', field 4 defines the font style ('normal',''bold', 'italic' or 'bold-italic') and field 5 defines the numeric scale factor for the font size (eg. with value 2, font size for that label will be 2x the standard size) #for 'clade' and 'branch', field 4 defines the branch style ('normal' or 'dashed') and field 5 defines the branch width scale factor (eg. with value 0.5, branch width for that clade will be 0.5 the standard width) #Internal tree nodes can be specified using IDs directly, or using the 'last common ancestor' method described in iTOL help pages #=================================================================# # Actual data follows after the "DATA" keyword # #=================================================================# DATA #NODE_ID TYPE COLOR LABEL_OR_STYLE SIZE_FACTOR #Examples #internal node with solid branches colored blue and twice the standard width #9031|9606 clade #0000ff normal 2 #internal node with dashed branches colored red and one half the standard width #601|340 clade #ff0000 dashed 0.5 #a single internal branch colored green, dashed and 5 times the normal width #915|777 branch #00ff00 dashed 5 #colored range covering all leaves of an internal node, colored red and with label 'Eukaryota' #184922|9606 range #ff0000 Eukaryota #examples of colored ranges from iTOL's Tree of Life #2190|2287 range #aaffaa Archaea #623|1502 range #aaaaff Bacteria #leaf label for node 9606 will be displayed in green, bold and twice the regular font size #9606 label #00ff00 bold 2 #leaf label for node 9031 will be displayed in yellow, bold italic and half the regular font size #9031 label #ffff00 bold-italic 0.5 #leaf label for node 8015 will be displayed in blue #8015 label #0000ff #leaf label for node 9606 will have a semi-transparent red background #9606 label_background rgba(255,0,0,0.5)